Variant report

Variant	rs11827240
Chromosome Location	chr11:17025060-17025061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17024201..17025759-chr11:17097816..17100627,2	K562	blood:
2	chr11:17021413..17022968-chr11:17024087..17025925,2	MCF-7	breast:
3	chr11:17018572..17027460-chr11:17032241..17037685,12	MCF-7	breast:
4	chr11:17024050..17026713-chr11:17028682..17030189,2	K562	blood:

Variant related genes	Relation type
ENSG00000266493	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10766369	0.86[YRI][hapmap]
rs4757471	0.86[YRI][hapmap]
rs7103869	0.84[YRI][hapmap]
rs7120819	0.86[YRI][hapmap]
rs73429212	0.89[AFR][1000 genomes]
rs73431225	0.92[AFR][1000 genomes]
rs7933318	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17006400-17034000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:17009400-17032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:17009800-17030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:17009800-17032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:17009800-17032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17013400-17033800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:17016400-17034600	Weak transcription	Aorta	Aorta
9	chr11:17016600-17030800	Weak transcription	Fetal Kidney	kidney
10	chr11:17018000-17028000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:17018000-17029400	Weak transcription	Brain Anterior Caudate	brain
12	chr11:17018800-17032000	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:17019000-17032600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:17019200-17025600	Weak transcription	A549	lung
15	chr11:17019400-17034800	Weak transcription	Lung	lung
16	chr11:17019800-17034600	Weak transcription	Right Ventricle	heart
17	chr11:17021000-17025200	Weak transcription	HepG2	liver
18	chr11:17021000-17034000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:17021000-17034200	Weak transcription	Colonic Mucosa	Colon
20	chr11:17021200-17034600	Weak transcription	Right Atrium	heart
21	chr11:17021400-17030400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:17022000-17034600	Weak transcription	Brain Angular Gyrus	brain
23	chr11:17022200-17027200	Weak transcription	Adipose Nuclei	Adipose
24	chr11:17022800-17026000	Genic enhancers	Fetal Intestine Large	intestine
25	chr11:17023200-17026600	Weak transcription	Esophagus	oesophagus
26	chr11:17023200-17028600	Weak transcription	Left Ventricle	heart
27	chr11:17023200-17032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:17023200-17033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:17023800-17026400	Weak transcription	Liver	Liver
30	chr11:17023800-17028400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:17024000-17026000	Weak transcription	Pancreas	Pancrea
32	chr11:17024000-17029600	Weak transcription	Fetal Stomach	stomach
33	chr11:17024200-17025200	Weak transcription	Stomach Mucosa	stomach
34	chr11:17024600-17026600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:17024800-17025600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:17024800-17025600	Genic enhancers	Gastric	stomach
37	chr11:17024800-17027200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr11:17025000-17025600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:17025000-17025600	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:17025000-17025600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr11:17025000-17026800	Genic enhancers	Fetal Intestine Small	intestine

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