Variant report

Variant	rs10766369
Chromosome Location	chr11:17018844-17018845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17014688..17017015-chr11:17017625..17019275,2	MCF-7	breast:
2	chr11:17018572..17027460-chr11:17032241..17037685,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10741718	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827240	0.86[YRI][hapmap]
rs4757471	0.91[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120819	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17006400-17034000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:17009400-17032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:17009800-17030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:17009800-17032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:17009800-17032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17010000-17019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:17010000-17023000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:17012400-17024200	Enhancers	Stomach Mucosa	stomach
10	chr11:17013400-17033800	Weak transcription	Brain Substantia Nigra	brain
11	chr11:17014000-17023400	Weak transcription	Fetal Stomach	stomach
12	chr11:17014000-17025000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:17014200-17019200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:17014200-17021200	Genic enhancers	Fetal Intestine Small	intestine
15	chr11:17014200-17021400	Enhancers	Fetal Intestine Large	intestine
16	chr11:17014400-17019000	Enhancers	Liver	Liver
17	chr11:17014600-17019000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:17014600-17021000	Enhancers	Pancreas	Pancrea
19	chr11:17015000-17024800	Enhancers	Gastric	stomach
20	chr11:17016000-17022600	Weak transcription	Esophagus	oesophagus
21	chr11:17016400-17019400	Enhancers	Adipose Nuclei	Adipose
22	chr11:17016400-17034600	Weak transcription	Aorta	Aorta
23	chr11:17016600-17030800	Weak transcription	Fetal Kidney	kidney
24	chr11:17017200-17019200	Enhancers	Fetal Heart	heart
25	chr11:17017400-17019600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:17017400-17019800	Enhancers	Psoas Muscle	Psoas
27	chr11:17017400-17019800	Enhancers	Right Ventricle	heart
28	chr11:17017600-17019600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr11:17017600-17020000	Enhancers	Left Ventricle	heart
30	chr11:17017800-17019000	Genic enhancers	HepG2	liver
31	chr11:17017800-17019400	Enhancers	Lung	lung
32	chr11:17017800-17021200	Enhancers	Right Atrium	heart
33	chr11:17018000-17019200	Enhancers	Spleen	Spleen
34	chr11:17018000-17020400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:17018000-17028000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:17018000-17029400	Weak transcription	Brain Anterior Caudate	brain
37	chr11:17018200-17019000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr11:17018400-17020000	Enhancers	Small Intestine	intestine
39	chr11:17018400-17021200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:17018600-17019400	Flanking Active TSS	Colonic Mucosa	Colon
41	chr11:17018600-17019400	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr11:17018600-17019800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
43	chr11:17018800-17019000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:17018800-17019200	Strong transcription	A549	lung
45	chr11:17018800-17032000	Weak transcription	Fetal Muscle Leg	muscle

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