Variant report

Variant	rs73429613
Chromosome Location	chr11:4011681-4011682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55687658	0.91[AFR][1000 genomes]
rs58280202	0.91[AFR][1000 genomes]
rs60603267	0.81[AFR][1000 genomes]
rs73425485	0.87[AFR][1000 genomes]
rs73427515	0.87[AFR][1000 genomes]
rs73427533	0.87[AFR][1000 genomes]
rs73427551	0.81[AFR][1000 genomes]
rs73427553	0.95[AFR][1000 genomes]
rs73427554	0.95[AFR][1000 genomes]
rs73427559	0.95[AFR][1000 genomes]
rs73427564	0.81[AFR][1000 genomes]
rs73429606	0.95[AFR][1000 genomes]
rs73429610	0.95[AFR][1000 genomes]
rs73429636	0.91[AFR][1000 genomes]
rs74051576	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv971974	chr11:4009259-4018790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
2	chr11:3994400-4016600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:4001400-4011800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:4003200-4016600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:4005400-4011800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:4006200-4013800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:4006400-4016600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:4006800-4022600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:4007000-4012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:4007200-4013800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:4007200-4014000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:4007800-4015000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:4008600-4015400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:4009000-4013800	Weak transcription	Primary B cells from cord blood	blood
15	chr11:4009400-4012400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:4009400-4012400	Weak transcription	Psoas Muscle	Psoas
17	chr11:4009400-4017400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:4009400-4020200	Weak transcription	Pancreas	Pancrea
19	chr11:4009600-4017200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:4010000-4012000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:4010000-4012800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:4010200-4011800	Enhancers	Dnd41	blood
23	chr11:4010800-4011800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:4010800-4012000	Enhancers	Primary T cells from cord blood	blood
25	chr11:4010800-4015800	Weak transcription	Left Ventricle	heart
26	chr11:4010800-4015800	Weak transcription	Thymus	Thymus
27	chr11:4010800-4017200	Weak transcription	Fetal Thymus	thymus
28	chr11:4011000-4011800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr11:4011000-4011800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr11:4011000-4012400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:4011000-4012400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:4011000-4012400	Weak transcription	Fetal Stomach	stomach
33	chr11:4011000-4012400	Weak transcription	Ovary	ovary
34	chr11:4011200-4011800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:4011200-4012400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:4011200-4014400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:4011200-4014400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:4011400-4011800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr11:4011400-4013200	Weak transcription	A549	lung
40	chr11:4011600-4011800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:4011600-4012800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr11:4011600-4015000	Weak transcription	Primary B cells from peripheral blood	blood

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