Variant report
| Variant | rs73432317 |
|---|---|
| Chromosome Location | chr6:54697901-54697902 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11964104 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11964138 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11964644 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11964669 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12660174 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12661878 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12662799 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12663440 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12664770 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4360136 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs57591249 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62412629 | 0.82[ASN][1000 genomes] |
| rs6901739 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6901740 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73430702 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73432306 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73432315 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7773434 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2763553 | chr6:54687979-54820487 | Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
