Variant report

Variant	rs73432796
Chromosome Location	chr6:30735451-30735452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30735343..30739242-chr6:30745410..30750382,5	MCF-7	breast:
2	chr6:30734711..30736301-chr6:30853270..30855138,2	MCF-7	breast:
3	chr6:30734934..30736907-chr6:30848739..30852223,3	MCF-7	breast:
4	chr6:30735347..30739906-chr6:30783605..30789456,10	MCF-7	breast:
5	chr6:30583545..30586231-chr6:30734562..30736210,2	K562	blood:
6	chr6:30735402..30739247-chr6:30785239..30791444,10	MCF-7	breast:
7	chr6:30735125..30737471-chr6:30740402..30742755,2	MCF-7	breast:
8	chr6:30708700..30710764-chr6:30734085..30735975,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137312	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000228022	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11757306	0.86[ASN][1000 genomes]
rs11758183	0.86[ASN][1000 genomes]
rs1264350	1.00[ASN][1000 genomes]
rs28744105	1.00[ASN][1000 genomes]
rs3095338	0.87[ASN][1000 genomes]
rs55745908	0.86[ASN][1000 genomes]
rs57065637	1.00[ASN][1000 genomes]
rs57817411	1.00[ASN][1000 genomes]
rs58554612	1.00[ASN][1000 genomes]
rs58594197	1.00[ASN][1000 genomes]
rs6457281	0.86[ASN][1000 genomes]
rs6930910	0.86[ASN][1000 genomes]
rs73425726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73432800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73437885	1.00[ASN][1000 genomes]
rs7746003	0.86[ASN][1000 genomes]
rs7751952	0.86[ASN][1000 genomes]
rs7759803	0.86[ASN][1000 genomes]
rs9262174	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv884100	chr6:30693816-30751326	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
8	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
10	nsv870418	chr6:30713196-30755668	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	nsv527226	chr6:30716719-30772378	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv884103	chr6:30729487-30755668	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30720600-30736600	Weak transcription	Gastric	stomach
2	chr6:30726800-30739000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:30728000-30737000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:30728200-30736400	Weak transcription	Lung	lung
5	chr6:30728200-30736600	Weak transcription	Aorta	Aorta
6	chr6:30731000-30735600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:30731000-30738800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:30732000-30736200	Weak transcription	Esophagus	oesophagus
9	chr6:30732000-30736400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:30732000-30736400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:30732000-30736600	Weak transcription	HSMM	muscle
12	chr6:30732000-30736800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:30732200-30735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:30732200-30736200	Weak transcription	NHLF	lung
15	chr6:30732200-30736400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:30732200-30736400	Weak transcription	NHDF-Ad	bronchial
17	chr6:30732200-30736600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:30732200-30736800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:30732200-30737000	Weak transcription	Fetal Lung	lung
20	chr6:30732400-30735800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:30732400-30735800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:30732400-30736000	Weak transcription	HMEC	breast
23	chr6:30732400-30736200	Weak transcription	Fetal Stomach	stomach
24	chr6:30732400-30736400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:30732400-30736400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:30732400-30736400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:30732400-30736400	Enhancers	A549	lung
28	chr6:30732400-30736400	Enhancers	HepG2	liver
29	chr6:30732400-30736400	Weak transcription	HSMMtube	muscle
30	chr6:30732400-30736600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:30732400-30736600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:30732400-30736600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:30732400-30736800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:30732400-30736800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:30732400-30736800	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:30732600-30736400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:30732800-30736000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:30732800-30736000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:30732800-30736000	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:30732800-30736000	Weak transcription	Small Intestine	intestine
41	chr6:30732800-30736200	Weak transcription	HUVEC	blood vessel
42	chr6:30732800-30736400	Weak transcription	Placenta	Placenta
43	chr6:30733200-30736600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:30733400-30736400	Enhancers	Hela-S3	cervix
45	chr6:30733400-30736800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:30733600-30736600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:30733800-30736600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:30734000-30736400	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:30734000-30736800	Enhancers	NH-A	brain
50	chr6:30734000-30737000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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