Variant report

Variant	rs73432800
Chromosome Location	chr6:30738600-30738601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30735343..30739242-chr6:30745410..30750382,5	MCF-7	breast:
2	chr10:104401695..104404644-chr6:30737594..30739724,2	MCF-7	breast:
3	chr6:30736125..30739794-chr6:30850488..30852740,4	MCF-7	breast:
4	chr6:30639159..30640838-chr6:30736824..30738928,2	MCF-7	breast:
5	chr6:30736036..30738964-chr6:30760194..30762277,2	K562	blood:
6	chr6:30735949..30738859-chr6:30853029..30855349,2	MCF-7	breast:
7	chr6:30614159..30616330-chr6:30736952..30738701,2	MCF-7	breast:
8	chr6:30735347..30739906-chr6:30783605..30789456,10	MCF-7	breast:
9	chr6:30583226..30586077-chr6:30737832..30742122,4	K562	blood:
10	chr6:30735402..30739247-chr6:30785239..30791444,10	MCF-7	breast:
11	chr6:30726903..30729816-chr6:30736090..30739671,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272933	Chromatin interaction
ENSG00000204560	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000204564	Chromatin interaction
ENSG00000228022	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000171206	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11757306	0.86[ASN][1000 genomes]
rs11758183	0.86[ASN][1000 genomes]
rs1264350	1.00[ASN][1000 genomes]
rs28744105	1.00[ASN][1000 genomes]
rs3095338	0.87[ASN][1000 genomes]
rs55745908	0.86[ASN][1000 genomes]
rs57065637	1.00[ASN][1000 genomes]
rs57817411	1.00[ASN][1000 genomes]
rs58554612	1.00[ASN][1000 genomes]
rs58594197	1.00[ASN][1000 genomes]
rs6457281	0.86[ASN][1000 genomes]
rs6930910	0.86[ASN][1000 genomes]
rs73425726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73432796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73434608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73437885	1.00[ASN][1000 genomes]
rs7746003	0.86[ASN][1000 genomes]
rs7751952	0.86[ASN][1000 genomes]
rs7759803	0.86[ASN][1000 genomes]
rs9262174	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv884100	chr6:30693816-30751326	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
8	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
10	nsv870418	chr6:30713196-30755668	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	nsv527226	chr6:30716719-30772378	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv884103	chr6:30729487-30755668	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30726800-30739000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:30731000-30738800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:30734400-30738800	Enhancers	Fetal Thymus	thymus
4	chr6:30734800-30747400	Weak transcription	Liver	Liver
5	chr6:30735000-30738600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:30735000-30738800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:30735400-30738800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:30735400-30738800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:30735400-30739000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:30735400-30739200	Enhancers	Thymus	Thymus
11	chr6:30736000-30738600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:30736000-30738800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:30736400-30739000	Enhancers	NHDF-Ad	bronchial
14	chr6:30736600-30738600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:30736600-30738600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:30737000-30739000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:30737200-30738600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:30737200-30738600	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:30737400-30738600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:30737400-30738600	Enhancers	NHLF	lung
21	chr6:30737400-30738800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:30737400-30738800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:30737400-30738800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:30737400-30738800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:30737400-30738800	Enhancers	Dnd41	blood
26	chr6:30737400-30738800	Enhancers	HUVEC	blood vessel
27	chr6:30737400-30739000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:30737400-30739000	Enhancers	HMEC	breast
29	chr6:30737400-30739400	Enhancers	Primary T cells from cord blood	blood
30	chr6:30737600-30738600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:30737600-30738600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:30737600-30739000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:30737600-30739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:30737600-30739000	Enhancers	K562	blood
35	chr6:30737600-30742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:30737600-30742400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:30737600-30742400	Weak transcription	Left Ventricle	heart
38	chr6:30737600-30744200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:30737600-30746000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:30737600-30746000	Weak transcription	Fetal Lung	lung
41	chr6:30737600-30746000	Weak transcription	Gastric	stomach
42	chr6:30737600-30746000	Weak transcription	Lung	lung
43	chr6:30737600-30746000	Weak transcription	Pancreas	Pancrea
44	chr6:30737600-30746000	Weak transcription	Right Atrium	heart
45	chr6:30737600-30746000	Weak transcription	Right Ventricle	heart
46	chr6:30737600-30746000	Weak transcription	Spleen	Spleen
47	chr6:30737600-30746200	Weak transcription	Psoas Muscle	Psoas
48	chr6:30737600-30746600	Weak transcription	Aorta	Aorta
49	chr6:30737600-30749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:30737800-30738600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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