Variant report
| Variant | rs73433896 |
|---|---|
| Chromosome Location | chr7:120078887-120078888 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs58182881 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60202137 | 0.83[AFR][1000 genomes] |
| rs73431995 | 0.83[AFR][1000 genomes] |
| rs73431997 | 0.83[AFR][1000 genomes] |
| rs73433810 | 0.83[AFR][1000 genomes] |
| rs73433843 | 0.84[AFR][1000 genomes] |
| rs73433856 | 0.83[AFR][1000 genomes] |
| rs73433871 | 0.83[AFR][1000 genomes] |
| rs73435806 | 0.90[AFR][1000 genomes] |
| rs73435836 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73435839 | 1.00[AMR][1000 genomes] |
| rs73435860 | 0.83[AFR][1000 genomes] |
| rs73435864 | 0.83[AFR][1000 genomes] |
| rs73435871 | 0.83[AFR][1000 genomes] |
| rs73435874 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024920 | chr7:120002420-120083753 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv516686 | chr7:120015843-120223084 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1026821 | chr7:120020317-120190437 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120078200-120080200 | Weak transcription | GM12878-XiMat | blood |
