Variant report

Variant	rs73435871
Chromosome Location	chr7:120114085-120114086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs58182881	0.89[AFR][1000 genomes]
rs60202137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429988	0.88[AFR][1000 genomes]
rs73429998	0.88[AFR][1000 genomes]
rs73431924	0.88[AFR][1000 genomes]
rs73431934	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433843	0.80[AFR][1000 genomes]
rs73433856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433896	0.83[AFR][1000 genomes]
rs73435806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435902	0.92[AFR][1000 genomes]
rs73437811	0.92[AFR][1000 genomes]
rs73437840	0.86[AFR][1000 genomes]
rs73437862	0.86[AFR][1000 genomes]
rs73437865	0.86[AFR][1000 genomes]
rs73437874	0.86[AFR][1000 genomes]
rs73437881	0.86[AFR][1000 genomes]
rs73439875	0.83[AFR][1000 genomes]
rs73439881	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120113400-120116800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links