Variant report

Variant	rs73435902
Chromosome Location	chr7:120130038-120130039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs41483447	0.83[AFR][1000 genomes]
rs58182881	0.82[AFR][1000 genomes]
rs60202137	0.92[AFR][1000 genomes]
rs73429988	0.82[AFR][1000 genomes]
rs73429998	0.82[AFR][1000 genomes]
rs73431924	0.82[AFR][1000 genomes]
rs73431934	0.82[AFR][1000 genomes]
rs73431939	0.89[AFR][1000 genomes]
rs73431940	0.89[AFR][1000 genomes]
rs73431941	0.89[AFR][1000 genomes]
rs73431945	0.82[AFR][1000 genomes]
rs73431949	0.89[AFR][1000 genomes]
rs73431961	0.89[AFR][1000 genomes]
rs73431967	0.89[AFR][1000 genomes]
rs73431976	0.89[AFR][1000 genomes]
rs73431981	0.89[AFR][1000 genomes]
rs73431995	0.92[AFR][1000 genomes]
rs73431997	0.92[AFR][1000 genomes]
rs73433810	0.92[AFR][1000 genomes]
rs73433856	0.92[AFR][1000 genomes]
rs73433871	0.92[AFR][1000 genomes]
rs73435806	0.85[AFR][1000 genomes]
rs73435860	0.92[AFR][1000 genomes]
rs73435864	0.92[AFR][1000 genomes]
rs73435871	0.92[AFR][1000 genomes]
rs73435874	0.92[AFR][1000 genomes]
rs73435889	0.96[AFR][1000 genomes]
rs73437811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437840	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437862	0.93[AFR][1000 genomes]
rs73437865	0.93[AFR][1000 genomes]
rs73437874	0.93[AFR][1000 genomes]
rs73437881	0.93[AFR][1000 genomes]
rs73439875	0.90[AFR][1000 genomes]
rs73439881	0.87[AFR][1000 genomes]
rs73439895	0.83[AFR][1000 genomes]
rs73441808	0.83[AFR][1000 genomes]
rs73441816	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120121200-120131200	Weak transcription	GM12878-XiMat	blood
2	chr7:120122600-120139400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120127800-120139400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:120127800-120141800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:120128000-120130600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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