Variant report

Variant	rs73434465
Chromosome Location	chr15:74846960-74846961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74844978..74847110-chr15:74906294..74910595,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34983171	1.00[AMR][1000 genomes]
rs73434462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74836200-74848000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:74838600-74847600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:74839000-74855600	Weak transcription	Aorta	Aorta
4	chr15:74839000-74863400	Weak transcription	Gastric	stomach
5	chr15:74839000-74863600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74839200-74847400	Weak transcription	Osteobl	bone
7	chr15:74839200-74847800	Weak transcription	Psoas Muscle	Psoas
8	chr15:74839200-74850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:74839200-74856400	Weak transcription	Fetal Kidney	kidney
10	chr15:74839200-74859200	Weak transcription	HepG2	liver
11	chr15:74839200-74860800	Weak transcription	Colonic Mucosa	Colon
12	chr15:74839200-74862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:74839200-74865200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:74839200-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74839200-74866800	Weak transcription	Pancreas	Pancrea
16	chr15:74839400-74865800	Weak transcription	HUVEC	blood vessel
17	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
18	chr15:74839600-74862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:74840000-74862000	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
21	chr15:74840800-74862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:74841000-74862000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:74841000-74862000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:74841200-74850600	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:74841200-74851200	Weak transcription	Small Intestine	intestine
26	chr15:74841200-74854800	Weak transcription	Spleen	Spleen
27	chr15:74841200-74857800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:74841200-74859400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:74841200-74862000	Weak transcription	Brain Substantia Nigra	brain
30	chr15:74841200-74862200	Weak transcription	Brain Angular Gyrus	brain
31	chr15:74841200-74862400	Weak transcription	Left Ventricle	heart
32	chr15:74841200-74862600	Weak transcription	Right Ventricle	heart
33	chr15:74841400-74851200	Weak transcription	Brain Anterior Caudate	brain
34	chr15:74841400-74857800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:74841400-74861800	Weak transcription	Thymus	Thymus
36	chr15:74842400-74848200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:74842400-74862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:74842400-74865000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:74842600-74848000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:74842600-74862000	Weak transcription	NH-A	brain
41	chr15:74842800-74850200	Weak transcription	Fetal Brain Male	brain
42	chr15:74843000-74855800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:74843200-74848400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:74843200-74856000	Weak transcription	Lung	lung
45	chr15:74843200-74862000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:74843200-74865600	Weak transcription	Esophagus	oesophagus
47	chr15:74843400-74850000	Weak transcription	NHEK	skin
48	chr15:74843400-74855400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:74843400-74857600	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:74843400-74857800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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