Variant report

Variant	rs73435304
Chromosome Location	chr9:19032495-19032496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:19032362..19034123-chr9:19046838..19049376,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155876	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56784233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57612660	1.00[AMR][1000 genomes]
rs59273023	1.00[AMR][1000 genomes]
rs59418778	1.00[AMR][1000 genomes]
rs59981039	1.00[AMR][1000 genomes]
rs61045011	1.00[AMR][1000 genomes]
rs67503152	1.00[AMR][1000 genomes]
rs73427277	1.00[AMR][1000 genomes]
rs73431254	1.00[AMR][1000 genomes]
rs73431261	1.00[AMR][1000 genomes]
rs73431265	1.00[AMR][1000 genomes]
rs73431268	1.00[AMR][1000 genomes]
rs73431271	1.00[AMR][1000 genomes]
rs73431275	1.00[AMR][1000 genomes]
rs73431285	1.00[AMR][1000 genomes]
rs73433225	1.00[AMR][1000 genomes]
rs73433240	1.00[AMR][1000 genomes]
rs73433252	1.00[AMR][1000 genomes]
rs73435322	1.00[AFR][1000 genomes]
rs73435323	1.00[AMR][1000 genomes]
rs73435347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv519909	chr9:19027880-19033376	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19031200-19032600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:19031400-19032600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:19032200-19032600	Enhancers	Fetal Stomach	stomach
4	chr9:19032200-19032800	Bivalent Enhancer	Fetal Intestine Large	intestine
5	chr9:19032400-19033000	Enhancers	K562	blood

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