Variant report

Variant	rs73431265
Chromosome Location	chr9:18979346-18979347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12003172	1.00[AMR][1000 genomes]
rs56784233	1.00[AMR][1000 genomes]
rs57612660	1.00[AMR][1000 genomes]
rs59273023	1.00[AMR][1000 genomes]
rs59418778	1.00[AMR][1000 genomes]
rs59981039	1.00[AMR][1000 genomes]
rs61045011	1.00[AMR][1000 genomes]
rs67503152	1.00[AMR][1000 genomes]
rs728362	1.00[AMR][1000 genomes]
rs73427277	1.00[AMR][1000 genomes]
rs73429211	0.81[AFR][1000 genomes]
rs73429219	0.81[AFR][1000 genomes]
rs73431254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431285	1.00[AMR][1000 genomes]
rs73433225	1.00[AMR][1000 genomes]
rs73433240	1.00[AMR][1000 genomes]
rs73433252	1.00[AMR][1000 genomes]
rs73435304	1.00[AMR][1000 genomes]
rs73435316	0.81[AFR][1000 genomes]
rs73435323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:18971200-18981600	Weak transcription	Gastric	stomach
3	chr9:18971400-18979400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:18975000-18980600	Enhancers	Fetal Thymus	thymus
5	chr9:18975200-18979400	Weak transcription	Lung	lung
6	chr9:18976800-18979600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:18977000-18979400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:18977000-18979400	Weak transcription	Ovary	ovary
9	chr9:18977000-18979800	Weak transcription	Fetal Heart	heart
10	chr9:18977000-18980000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:18977000-18981400	Weak transcription	Adipose Nuclei	Adipose
12	chr9:18977000-18981400	Weak transcription	Aorta	Aorta
13	chr9:18977000-18981400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:18977000-18982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:18977200-18980200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:18977200-18980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:18977200-18982200	Weak transcription	NHEK	skin
18	chr9:18977400-18979400	Weak transcription	HUVEC	blood vessel
19	chr9:18977400-18979400	Weak transcription	NH-A	brain
20	chr9:18977400-18979400	Weak transcription	NHLF	lung
21	chr9:18977400-18979600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:18977400-18979600	Weak transcription	Fetal Kidney	kidney
23	chr9:18977400-18979600	Weak transcription	Fetal Stomach	stomach
24	chr9:18977400-18979800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:18977400-18979800	Weak transcription	Stomach Mucosa	stomach
26	chr9:18977600-18979400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:18977600-18979400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:18977600-18979400	Weak transcription	Fetal Lung	lung
29	chr9:18977800-18979400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:18977800-18979400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:18977800-18979400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:18977800-18979400	Weak transcription	Osteobl	bone
33	chr9:18978800-18981800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:18979200-18980600	Enhancers	NHDF-Ad	bronchial

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