Variant report

Variant	rs73435316
Chromosome Location	chr9:19036857-19036858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:84)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:84 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:19036640-19036860	HepG2	liver:	n/a	n/a
2	CTCF	chr9:19036720-19036870	MCF-7	breast:	n/a	n/a
3	CTCF	chr9:19036760-19036910	GM12875	blood:	n/a	n/a
4	RAD21	chr9:19036626-19037003	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr9:19036740-19036890	HUVEC	blood vessel:	n/a	n/a
6	CTCF	chr9:19036744-19036873	HUVEC	blood vessel:	n/a	n/a
7	CTCF	chr9:19036800-19036950	HA-sp	spinal cord:	n/a	n/a
8	CTCF	chr9:19036720-19036870	SK-N-SH_RA	brain:	n/a	n/a
9	CTCF	chr9:19036760-19036910	GM12878	blood:	n/a	n/a
10	CTCF	chr9:19036720-19036870	HMEC	breast:	n/a	n/a
11	CTCF	chr9:19036748-19036874	GM13977	blood:	n/a	n/a
12	CTCF	chr9:19036720-19036870	HEK293	kidney:	n/a	n/a
13	CTCF	chr9:19036720-19036870	HBMEC	blood vessel:	n/a	n/a
14	CTCF	chr9:19036720-19036870	AG09309	skin:	n/a	n/a
15	CTCF	chr9:19036720-19036870	AG09319	gingival:	n/a	n/a
16	CTCF	chr9:19036728-19036889	MCF-7	breast:	n/a	n/a
17	CTCF	chr9:19036720-19036907	A549	lung:	n/a	n/a
18	CTCF	chr9:19036720-19036870	AG04450	lung:	n/a	n/a
19	CTCF	chr9:19036780-19036930	HepG2	liver:	n/a	n/a
20	CTCF	chr9:19036740-19036890	GM12872	blood:	n/a	n/a
21	CTCF	chr9:19036760-19036910	NHEK	skin:	n/a	n/a
22	CTCF	chr9:19036800-19036950	HL-60	blood:	n/a	n/a
23	CTCF	chr9:19036720-19036870	GM12865	blood:	n/a	n/a
24	CTCF	chr9:19036740-19036890	GM12875	blood:	n/a	n/a
25	CTCF	chr9:19036729-19036937	Fibrobl	skin:	n/a	n/a
26	CTCF	chr9:19036740-19036890	HA-sp	spinal cord:	n/a	n/a
27	CTCF	chr9:19036760-19036910	HCPEpiC	choroid plexus:	n/a	n/a
28	CTCF	chr9:19036820-19036970	RPTEC	kidney:	n/a	n/a
29	CTCF	chr9:19036800-19036950	HCM	heart:	n/a	n/a
30	CTCF	chr9:19036777-19036870	GM10248	blood:	n/a	n/a
31	CTCF	chr9:19036720-19036870	GM06990	blood:	n/a	n/a
32	CTCF	chr9:19036740-19036890	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr9:19036740-19036890	GM12865	blood:	n/a	n/a
34	CTCF	chr9:19036760-19036910	NB4	blood:	n/a	n/a
35	CTCF	chr9:19036720-19036870	WERI-Rb-1	eye:	n/a	n/a
36	CTCF	chr9:19036615-19036920	K562	blood:	n/a	n/a
37	CTCF	chr9:19036724-19036887	K562	blood:	n/a	n/a
38	CTCF	chr9:19036740-19036890	GM12864	blood:	n/a	n/a
39	CTCF	chr9:19036740-19036890	HRE	kidney:	n/a	n/a
40	CTCF	chr9:19036780-19036930	AG09309	skin:	n/a	n/a
41	CTCF	chr9:19036740-19036890	WERI-Rb-1	eye:	n/a	n/a
42	CTCF	chr9:19036760-19036910	GM12864	blood:	n/a	n/a
43	CTCF	chr9:19036720-19036870	HVMF	connective:	n/a	n/a
44	CTCF	chr9:19036659-19036879	K562	blood:	n/a	n/a
45	CTCF	chr9:19036709-19036913	GM19240	blood:	n/a	n/a
46	CTCF	chr9:19036740-19036890	GM12873	blood:	n/a	n/a
47	CTCF	chr9:19036740-19036890	K562	blood:	n/a	n/a
48	CTCF	chr9:19036718-19036906	GM12892	blood:	n/a	n/a
49	CTCF	chr9:19036744-19036877	K562	blood:	n/a	n/a
50	CTCF	chr9:19036780-19036930	AoAF	blood vessel:	n/a	n/a

No data

Variant related genes	Relation type
FAM154A	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59418778	0.98[AFR][1000 genomes]
rs73431265	0.81[AFR][1000 genomes]
rs73431268	0.81[AFR][1000 genomes]
rs73431271	0.81[AFR][1000 genomes]
rs73431275	0.81[AFR][1000 genomes]
rs73435323	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv973452	chr9:19033958-19053096	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
6	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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