Variant report

Variant	rs73435464
Chromosome Location	chr11:26110798-26110799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11029196	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16915252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16915256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16915274	1.00[EUR][1000 genomes]
rs16915283	1.00[EUR][1000 genomes]
rs16915326	1.00[EUR][1000 genomes]
rs56290004	1.00[EUR][1000 genomes]
rs61018632	1.00[EUR][1000 genomes]
rs73433499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv972917	chr11:26104722-26110818	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26109200-26111200	Enhancers	Primary B cells from cord blood	blood
3	chr11:26109200-26111800	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:26109400-26110800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:26109400-26111400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:26109800-26110800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:26110400-26112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:26110600-26110800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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