Variant report

Variant	rs73437018
Chromosome Location	chr15:75472254-75472255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75470764..75472430-chr15:75499470..75502455,2	K562	blood:
2	chr15:75469534..75474777-chr15:75492822..75496497,7	MCF-7	breast:
3	chr15:75463144..75468102-chr15:75468873..75472339,5	K562	blood:
4	chr15:75463751..75466296-chr15:75471141..75473293,2	K562	blood:
5	chr15:75314701..75317395-chr15:75469848..75472562,3	K562	blood:
6	chr15:75471515..75473250-chr15:75493026..75495908,2	MCF-7	breast:
7	chr15:75469760..75472344-chr15:75490228..75493127,2	K562	blood:
8	chr15:75470196..75472288-chr15:75492167..75494098,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000260483	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28362067	1.00[AMR][1000 genomes]
rs57509570	1.00[AMR][1000 genomes]
rs57654778	1.00[AMR][1000 genomes]
rs58397909	1.00[AMR][1000 genomes]
rs59078717	1.00[AMR][1000 genomes]
rs73437030	1.00[AMR][1000 genomes]
rs73437031	1.00[AMR][1000 genomes]
rs73437042	1.00[AMR][1000 genomes]
rs73437054	1.00[AMR][1000 genomes]
rs73437055	1.00[AMR][1000 genomes]
rs73437074	1.00[AMR][1000 genomes]
rs73438811	1.00[AMR][1000 genomes]
rs8023648	1.00[AMR][1000 genomes]
rs8039385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75466400-75475600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:75466800-75473400	Enhancers	Placenta	Placenta
3	chr15:75468800-75472600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:75469200-75472800	Weak transcription	HMEC	breast
5	chr15:75469800-75475600	Enhancers	Fetal Heart	heart
6	chr15:75470000-75472400	Enhancers	GM12878-XiMat	blood
7	chr15:75470000-75473600	Enhancers	Fetal Lung	lung
8	chr15:75470000-75475200	Enhancers	NHDF-Ad	bronchial
9	chr15:75470200-75473200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:75470200-75475800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:75470400-75472600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:75470400-75472600	Weak transcription	A549	lung
13	chr15:75470400-75475400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:75470600-75473200	Enhancers	Fetal Brain Male	brain
15	chr15:75470800-75472600	Weak transcription	HSMM	muscle
16	chr15:75470800-75473600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:75471000-75472400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:75471000-75472800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr15:75471000-75473200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:75471200-75475400	Enhancers	Ovary	ovary
21	chr15:75471400-75472600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:75471400-75472800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:75471400-75473200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:75471400-75474600	Weak transcription	HUVEC	blood vessel
25	chr15:75471400-75475600	Enhancers	Fetal Intestine Large	intestine
26	chr15:75471400-75475600	Enhancers	Fetal Intestine Small	intestine
27	chr15:75471600-75472400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:75471600-75472400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr15:75471600-75472400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:75471600-75472600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:75471600-75472600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:75471600-75472600	Weak transcription	Left Ventricle	heart
33	chr15:75471600-75472800	Weak transcription	Aorta	Aorta
34	chr15:75471600-75473400	Enhancers	Adipose Nuclei	Adipose
35	chr15:75471600-75473400	Enhancers	Brain Hippocampus Middle	brain
36	chr15:75471600-75473400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr15:75471600-75473600	Enhancers	Fetal Stomach	stomach
38	chr15:75471600-75473600	Enhancers	Rectal Smooth Muscle	rectum
39	chr15:75471600-75473600	Enhancers	K562	blood
40	chr15:75471600-75475400	Enhancers	Duodenum Mucosa	Duodenum
41	chr15:75471600-75475600	Enhancers	Primary hematopoietic stem cells	blood
42	chr15:75471800-75472600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:75471800-75473000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr15:75471800-75473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:75471800-75473600	Enhancers	Brain Germinal Matrix	brain
46	chr15:75471800-75474200	Weak transcription	Small Intestine	intestine
47	chr15:75471800-75475000	Enhancers	Colon Smooth Muscle	Colon
48	chr15:75471800-75475400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr15:75471800-75475400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr15:75471800-75475600	Enhancers	Fetal Thymus	thymus

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