Variant report

Variant	rs73437030
Chromosome Location	chr15:75476913-75476914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28362067	1.00[AMR][1000 genomes]
rs57509570	1.00[AMR][1000 genomes]
rs57654778	1.00[AMR][1000 genomes]
rs58397909	1.00[AMR][1000 genomes]
rs59078717	1.00[AMR][1000 genomes]
rs73437018	1.00[AMR][1000 genomes]
rs73437031	1.00[AMR][1000 genomes]
rs73437042	1.00[AMR][1000 genomes]
rs73437054	1.00[AMR][1000 genomes]
rs73437055	1.00[AMR][1000 genomes]
rs73437074	1.00[AMR][1000 genomes]
rs73438811	1.00[AMR][1000 genomes]
rs8023648	1.00[AMR][1000 genomes]
rs8039385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75473000-75477800	Weak transcription	Right Ventricle	heart
2	chr15:75473000-75478800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:75473000-75487600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:75473200-75477800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:75473200-75483200	Weak transcription	Aorta	Aorta
6	chr15:75473200-75483400	Weak transcription	Left Ventricle	heart
7	chr15:75475200-75478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:75475200-75478400	Weak transcription	Thymus	Thymus
9	chr15:75475400-75477600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:75475400-75477800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:75475400-75477800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:75475400-75487800	Weak transcription	Right Atrium	heart
13	chr15:75475600-75477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:75475600-75477600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:75475600-75477600	Weak transcription	Fetal Heart	heart
16	chr15:75475600-75477600	Weak transcription	Fetal Thymus	thymus
17	chr15:75475600-75477800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:75475600-75480600	Weak transcription	HepG2	liver
19	chr15:75475600-75481600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:75475600-75487600	Weak transcription	Pancreas	Pancrea
21	chr15:75476400-75479000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:75476600-75478200	Enhancers	GM12878-XiMat	blood
23	chr15:75476600-75478800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr15:75476600-75479200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:75476800-75477000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr15:75476800-75477200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:75476800-75477200	Enhancers	Spleen	Spleen
28	chr15:75476800-75478400	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:75476800-75479000	Enhancers	Primary hematopoietic stem cells	blood
30	chr15:75476800-75479800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links