Variant report

Variant	rs73439613
Chromosome Location	chr11:26226520-26226521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59621361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437600	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439627	0.82[AFR][1000 genomes]
rs73439634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26219800-26240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26223000-26227000	Weak transcription	NHLF	lung
3	chr11:26225800-26226800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26226000-26228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:26226400-26226800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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