Variant report

Variant	rs73439627
Chromosome Location	chr11:26239524-26239525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11820372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695031	1.00[AMR][1000 genomes]
rs59621361	0.82[AFR][1000 genomes]
rs73435491	1.00[AMR][1000 genomes]
rs73437579	1.00[AMR][1000 genomes]
rs73437595	1.00[AMR][1000 genomes]
rs73437600	0.81[AFR][1000 genomes]
rs73439603	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439605	0.80[AFR][1000 genomes]
rs73439613	0.82[AFR][1000 genomes]
rs73439615	0.82[AFR][1000 genomes]
rs73439624	0.82[AFR][1000 genomes]
rs73439634	0.86[AFR][1000 genomes]
rs73439635	1.00[AMR][1000 genomes]
rs73439638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439644	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439645	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26219800-26240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26239400-26241800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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