Variant report

Variant	rs73439645
Chromosome Location	chr11:26256707-26256708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11820372	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435491	1.00[AMR][1000 genomes]
rs73437567	0.90[AFR][1000 genomes]
rs73437579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437595	1.00[AMR][1000 genomes]
rs73439603	1.00[AMR][1000 genomes]
rs73439627	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439635	1.00[AMR][1000 genomes]
rs73439638	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26255600-26256800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26255800-26256800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:26255800-26256800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26255800-26256800	Enhancers	HUVEC	blood vessel
6	chr11:26255800-26256800	Enhancers	NHEK	skin
7	chr11:26256000-26256800	Enhancers	Hela-S3	cervix
8	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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