Variant report

Variant	rs73439638
Chromosome Location	chr11:26250463-26250464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:22849848..22851465-chr11:26249283..26251670,2	K562	blood:

Variant related genes	Relation type
ENSG00000246225	Chromatin interaction
ENSG00000198168	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11820372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695031	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435491	1.00[AMR][1000 genomes]
rs73437579	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437595	1.00[AMR][1000 genomes]
rs73439603	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439634	0.82[AFR][1000 genomes]
rs73439635	1.00[AMR][1000 genomes]
rs73439644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26248000-26251800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26248400-26253400	Enhancers	Hela-S3	cervix
3	chr11:26248400-26254000	Enhancers	NHDF-Ad	bronchial
4	chr11:26248600-26251000	Enhancers	HSMM	muscle
5	chr11:26248600-26253400	Enhancers	NHLF	lung
6	chr11:26248600-26253800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:26248600-26254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:26248600-26254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:26248600-26254000	Enhancers	NHEK	skin
10	chr11:26249200-26251800	Enhancers	NH-A	brain
11	chr11:26249200-26252200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:26249200-26253600	Enhancers	Osteobl	bone
13	chr11:26249200-26253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:26249200-26254000	Enhancers	HMEC	breast
15	chr11:26249400-26252000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:26249400-26252000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:26249400-26252000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:26249400-26254000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:26249600-26250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:26250200-26251000	Flanking Active TSS	HUVEC	blood vessel
21	chr11:26250200-26256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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