Variant report

Variant	rs73439603
Chromosome Location	chr11:26219546-26219547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11820372	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695031	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435491	1.00[AMR][1000 genomes]
rs73437579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437595	1.00[AMR][1000 genomes]
rs73439627	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439635	1.00[AMR][1000 genomes]
rs73439638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439644	1.00[AMR][1000 genomes]
rs73439645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26211600-26220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:26211800-26220200	Weak transcription	NHLF	lung
3	chr11:26212400-26225000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26212600-26220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:26216800-26220800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:26217000-26220400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:26217400-26220000	Weak transcription	NHDF-Ad	bronchial
8	chr11:26217400-26220600	Weak transcription	Osteobl	bone
9	chr11:26218200-26220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:26219200-26220400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:26219400-26219600	Enhancers	Placenta	Placenta
12	chr11:26219400-26219800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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