Variant report

Variant	rs73439863
Chromosome Location	chr7:120191796-120191797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17142823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439879	0.85[AFR][1000 genomes]
rs73439885	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120189200-120192200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:120189200-120193000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:120189400-120192200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:120189600-120191800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:120189600-120192800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:120189800-120192600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:120190000-120192800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:120190600-120191800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:120190800-120196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:120191000-120193000	Weak transcription	GM12878-XiMat	blood
11	chr7:120191000-120193400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120191000-120196200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:120191600-120192600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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