Variant report
| Variant | rs73439879 |
|---|---|
| Chromosome Location | chr7:120212856-120212857 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:120204677..120206283-chr7:120210805..120213588,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs41483447 | 1.00[AMR][1000 genomes] |
| rs73423711 | 1.00[AMR][1000 genomes] |
| rs73437840 | 0.82[AFR][1000 genomes] |
| rs73437862 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73437865 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73437874 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73437881 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439863 | 0.85[AFR][1000 genomes] |
| rs73439875 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439881 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439885 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439886 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439892 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439895 | 1.00[AMR][1000 genomes] |
| rs73441808 | 1.00[AMR][1000 genomes] |
| rs73441816 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73441835 | 1.00[AMR][1000 genomes] |
| rs7796086 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516686 | chr7:120015843-120223084 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv889117 | chr7:120122040-120266458 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120200400-120223000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
