Variant report

Variant	rs7796086
Chromosome Location	chr7:120235939-120235940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs41483447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437840	0.81[AFR][1000 genomes]
rs73437862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437865	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437874	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73437881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439879	1.00[AMR][1000 genomes]
rs73439881	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439885	1.00[AMR][1000 genomes]
rs73439886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441808	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120235800-120236600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:120235800-120237000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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