Variant report

Variant	rs73440018
Chromosome Location	chr6:54521113-54521114
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56679790	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57806075	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58559999	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59251337	0.86[AFR][1000 genomes]
rs60582773	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6923484	0.91[AFR][1000 genomes]
rs6928647	0.91[AFR][1000 genomes]
rs73435986	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73438022	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73438030	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73438079	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73438089	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73440046	0.93[AFR][1000 genomes]
rs73440053	0.91[AFR][1000 genomes]
rs73440056	0.91[AFR][1000 genomes]
rs73440059	0.91[AFR][1000 genomes]
rs73440062	0.91[AFR][1000 genomes]
rs7740523	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54519000-54521200	Enhancers	Fetal Intestine Small	intestine
2	chr6:54520800-54521400	Enhancers	Fetal Intestine Large	intestine
3	chr6:54521000-54521200	Active TSS	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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