Variant report

Variant	rs73438079
Chromosome Location	chr6:54506426-54506427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56679790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806075	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58559999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59251337	0.84[AFR][1000 genomes]
rs60582773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61597134	1.00[EUR][1000 genomes]
rs6923484	0.88[AFR][1000 genomes]
rs6928647	0.88[AFR][1000 genomes]
rs73435986	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73440018	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73440046	0.91[AFR][1000 genomes]
rs73440053	0.88[AFR][1000 genomes]
rs73440056	0.88[AFR][1000 genomes]
rs73440059	0.88[AFR][1000 genomes]
rs73440062	0.88[AFR][1000 genomes]
rs7740523	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54505800-54506800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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