Variant report

Variant	rs73441281
Chromosome Location	chr9:22117586-22117587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:22106343..22112134-chr9:22114356..22121456,14	MCF-7	breast:
2	chr9:22117390..22119557-chr9:22241595..22244405,2	MCF-7	breast:
3	chr9:22081254..22084984-chr9:22116484..22118588,4	MCF-7	breast:
4	chr9:22117118..22121296-chr9:22132550..22137842,5	MCF-7	breast:
5	chr9:22117114..22119217-chr9:22236717..22238636,2	MCF-7	breast:
6	chr9:22117582..22119733-chr9:22124572..22127238,3	MCF-7	breast:
7	chr9:22084984..22089844-chr9:22117518..22121243,5	MCF-7	breast:
8	chr9:22116649..22120343-chr9:22129230..22133367,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTAP-1	chr9:22112761-22118822	NONHSAT130433

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59995170	1.00[AFR][1000 genomes]
rs60123355	1.00[AFR][1000 genomes]
rs60601001	1.00[AFR][1000 genomes]
rs61650117	1.00[AFR][1000 genomes]
rs73438868	1.00[AFR][1000 genomes]
rs73441209	1.00[AFR][1000 genomes]
rs73441213	1.00[AFR][1000 genomes]
rs73441296	1.00[AFR][1000 genomes]
rs73441297	1.00[AFR][1000 genomes]
rs73441298	1.00[AFR][1000 genomes]
rs73443203	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22097800-22122400	Weak transcription	Dnd41	blood
2	chr9:22106600-22117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:22109000-22117600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:22112600-22117600	Weak transcription	HMEC	breast
5	chr9:22112800-22117800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr9:22113400-22119800	Weak transcription	Small Intestine	intestine
7	chr9:22115000-22119600	Enhancers	NHLF	lung
8	chr9:22115200-22117600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:22115600-22117600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:22116200-22117800	Enhancers	NH-A	brain
11	chr9:22116200-22119600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:22116400-22119800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:22116600-22117600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:22116600-22118200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:22116600-22118400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:22116600-22118400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:22116600-22119000	Enhancers	NHDF-Ad	bronchial
18	chr9:22116600-22119400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:22116600-22119400	Enhancers	HSMM	muscle
20	chr9:22116600-22119600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:22116600-22119800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:22116600-22119800	Enhancers	Osteobl	bone
23	chr9:22116600-22120400	Enhancers	Fetal Intestine Small	intestine
24	chr9:22116800-22117800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:22116800-22119000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr9:22116800-22119000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:22116800-22119600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr9:22117000-22117800	Weak transcription	Fetal Kidney	kidney
29	chr9:22117000-22118600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr9:22117200-22117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr9:22117200-22118200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:22117200-22118400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:22117200-22118800	Enhancers	HepG2	liver
34	chr9:22117200-22119000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:22117200-22119000	Enhancers	HSMMtube	muscle
36	chr9:22117200-22119600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:22117200-22119800	Enhancers	NHEK	skin
38	chr9:22117200-22120400	Enhancers	Fetal Intestine Large	intestine
39	chr9:22117400-22117600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr9:22117400-22117600	Flanking Active TSS	HUVEC	blood vessel
41	chr9:22117400-22117800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr9:22117400-22118000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr9:22117400-22118000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr9:22117400-22118200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr9:22117400-22118200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:22117400-22118200	Enhancers	Esophagus	oesophagus
47	chr9:22117400-22118200	Enhancers	Ovary	ovary
48	chr9:22117400-22118200	Bivalent Enhancer	Pancreas	Pancrea
49	chr9:22117400-22118400	Enhancers	Colonic Mucosa	Colon
50	chr9:22117400-22118600	Flanking Active TSS	Hela-S3	cervix

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