Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:21801068..21804766-chr9:22124826..22127661,4	MCF-7	breast:
2	chr9:22123237..22127319-chr9:22132072..22135694,5	MCF-7	breast:
3	chr2:128473087..128474607-chr9:22122413..22125135,2	MCF-7	breast:
4	chr9:22123972..22126695-chr9:22237756..22240192,3	MCF-7	breast:
5	chr9:22112229..22115017-chr9:22124442..22126062,2	MCF-7	breast:
6	chr9:22124882..22127392-chr9:22128921..22130490,2	MCF-7	breast:
7	chr9:22007027..22009439-chr9:22123072..22125624,2	MCF-7	breast:
8	chr9:22103351..22105009-chr9:22124811..22127367,2	MCF-7	breast:
9	chr9:22120411..22122460-chr9:22123757..22126512,2	MCF-7	breast:
10	chr9:22107525..22110347-chr9:22123401..22125908,2	MCF-7	breast:
11	chr9:22117626..22120036-chr9:22123513..22125253,2	MCF-7	breast:
12	chr9:22117582..22119733-chr9:22124572..22127238,3	MCF-7	breast:
13	chr9:22123951..22126513-chr9:22237605..22240050,3	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:11)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1029889	chr9:22118046-22161828	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22119000-22128200	Weak transcription	HSMMtube	muscle
2	chr9:22119800-22129000	Weak transcription	HMEC	breast
3	chr9:22120000-22129200	Weak transcription	Stomach Mucosa	stomach
4	chr9:22121800-22125200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:22123400-22125200	Genic enhancers	A549	lung
6	chr9:22123400-22126200	Enhancers	Fetal Intestine Small	intestine
7	chr9:22123800-22125200	Enhancers	Fetal Intestine Large	intestine
8	chr9:22124400-22125200	Enhancers	HSMM	muscle
9	chr9:22124400-22125200	Enhancers	HUVEC	blood vessel
10	chr9:22124600-22125200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:22124600-22125200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:22124600-22125200	Enhancers	Duodenum Mucosa	Duodenum
13	chr9:22124600-22125200	Enhancers	Osteobl	bone
14	chr9:22124800-22125200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:22124800-22126200	Enhancers	Hela-S3	cervix
16	chr9:22124800-22128600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:22125000-22125200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr9:22125000-22127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:22125000-22128400	Weak transcription	NH-A	brain
20	chr9:22125000-22129000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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