Variant report

Variant	rs73442127
Chromosome Location	chr13:30296180-30296181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1275360	1.00[AMR][1000 genomes]
rs1571785	1.00[AMR][1000 genomes]
rs1756436	1.00[AMR][1000 genomes]
rs1756437	1.00[AMR][1000 genomes]
rs1756438	1.00[AMR][1000 genomes]
rs1756440	1.00[AMR][1000 genomes]
rs1756441	1.00[AMR][1000 genomes]
rs1756442	1.00[AMR][1000 genomes]
rs1756443	1.00[AMR][1000 genomes]
rs1756444	1.00[AMR][1000 genomes]
rs2669039	1.00[AMR][1000 genomes]
rs2776408	1.00[AMR][1000 genomes]
rs2776409	1.00[AMR][1000 genomes]
rs2776948	1.00[AMR][1000 genomes]
rs2776949	1.00[AMR][1000 genomes]
rs280946	1.00[AMR][1000 genomes]
rs280947	1.00[AMR][1000 genomes]
rs280955	1.00[AMR][1000 genomes]
rs2989343	1.00[AMR][1000 genomes]
rs2989597	1.00[AMR][1000 genomes]
rs3011604	1.00[AMR][1000 genomes]
rs476931	1.00[AMR][1000 genomes]
rs521122	1.00[AMR][1000 genomes]
rs521924	1.00[AMR][1000 genomes]
rs522946	1.00[AMR][1000 genomes]
rs527380	1.00[AMR][1000 genomes]
rs533768	1.00[AMR][1000 genomes]
rs553069	1.00[AMR][1000 genomes]
rs553271	1.00[AMR][1000 genomes]
rs554179	1.00[AMR][1000 genomes]
rs554904	1.00[AMR][1000 genomes]
rs558623	1.00[AMR][1000 genomes]
rs577666	1.00[AMR][1000 genomes]
rs595454	1.00[AMR][1000 genomes]
rs615487	1.00[AMR][1000 genomes]
rs634006	1.00[AMR][1000 genomes]
rs643986	1.00[AMR][1000 genomes]
rs645278	1.00[AMR][1000 genomes]
rs645778	1.00[AMR][1000 genomes]
rs645783	1.00[AMR][1000 genomes]
rs657993	1.00[AMR][1000 genomes]
rs659314	1.00[AMR][1000 genomes]
rs73442120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446262	1.00[AMR][1000 genomes]
rs819390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30295200-30297000	Enhancers	Spleen	Spleen
2	chr13:30296000-30296200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr13:30296000-30296600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30296000-30297000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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