Variant report

Variant	rs73442167
Chromosome Location	chr6:55780427-55780428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56010711	1.00[AMR][1000 genomes]
rs56298933	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57563300	1.00[AMR][1000 genomes]
rs57657757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978020	1.00[AMR][1000 genomes]
rs61391371	0.83[AFR][1000 genomes]
rs61596760	1.00[AMR][1000 genomes]
rs6901670	1.00[AMR][1000 genomes]
rs6919833	1.00[AMR][1000 genomes]
rs6926010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73442197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455131	1.00[AMR][1000 genomes]
rs73744991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55778200-55781000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:55778400-55780600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:55778400-55782200	Weak transcription	A549	lung
4	chr6:55778400-55782200	Weak transcription	NHDF-Ad	bronchial
5	chr6:55778600-55780800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:55778600-55780800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:55778600-55780800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:55778800-55780600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:55779000-55780800	Weak transcription	Osteobl	bone
10	chr6:55779000-55782000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:55779600-55780800	Weak transcription	Hela-S3	cervix
12	chr6:55780200-55780600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:55780400-55784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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