Variant report

Variant	rs7755163
Chromosome Location	chr6:55782575-55782576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56010711	1.00[AMR][1000 genomes]
rs56298933	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57563300	1.00[AMR][1000 genomes]
rs57657757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978020	1.00[AMR][1000 genomes]
rs61391371	0.83[AFR][1000 genomes]
rs61596760	1.00[AMR][1000 genomes]
rs6901670	1.00[AMR][1000 genomes]
rs6919833	1.00[AMR][1000 genomes]
rs6926010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73442167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73442197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455131	1.00[AMR][1000 genomes]
rs73744991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55780400-55784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:55780800-55784600	Enhancers	Hela-S3	cervix
3	chr6:55780800-55784600	Enhancers	HSMM	muscle
4	chr6:55780800-55785000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:55781200-55784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:55781400-55782600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:55781800-55782600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:55782200-55782600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:55782200-55782800	Enhancers	A549	lung
10	chr6:55782200-55784000	Enhancers	NHDF-Ad	bronchial
11	chr6:55782400-55782600	Enhancers	Osteobl	bone
12	chr6:55782400-55782800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:55782400-55782800	Enhancers	NHLF	lung
14	chr6:55782400-55783400	Enhancers	NHEK	skin
15	chr6:55782400-55784400	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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