Variant report

Variant	rs73443992
Chromosome Location	chr18:45510075-45510076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59073291	1.00[AMR][1000 genomes]
rs73445924	1.00[AMR][1000 genomes]
rs73445941	1.00[AMR][1000 genomes]
rs73445944	1.00[AMR][1000 genomes]
rs73445963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv978736	chr18:45504781-45511894	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3424747	chr18:45507779-45510327	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45501800-45510200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:45506200-45510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:45508200-45510400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:45508400-45510200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:45508400-45510200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:45509200-45510400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr18:45509200-45513000	Weak transcription	HSMM	muscle
8	chr18:45509200-45514800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr18:45509400-45510600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:45509400-45511000	Enhancers	Fetal Brain Male	brain
11	chr18:45509600-45510400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr18:45509600-45511000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:45509800-45511000	Enhancers	Fetal Brain Female	brain
14	chr18:45509800-45511200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr18:45510000-45510400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr18:45510000-45510800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr18:45510000-45511000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr18:45510000-45511200	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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