Variant report

Variant	rs73445963
Chromosome Location	chr18:45547996-45547997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45402056..45405449-chr18:45544846..45548415,3	MCF-7	breast:
2	chr18:45529640..45533731-chr18:45547574..45549695,3	MCF-7	breast:
3	chr18:45543619..45545550-chr18:45546902..45548694,2	K562	blood:
4	chr18:45314747..45316779-chr18:45546379..45548829,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59073291	1.00[AMR][1000 genomes]
rs73443992	1.00[AMR][1000 genomes]
rs73445924	1.00[AMR][1000 genomes]
rs73445941	1.00[AMR][1000 genomes]
rs73445944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45535200-45549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:45540000-45548800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:45544200-45548800	Enhancers	Hela-S3	cervix
4	chr18:45544800-45548600	Enhancers	Fetal Thymus	thymus
5	chr18:45546200-45549000	Weak transcription	Placenta	Placenta
6	chr18:45546200-45549200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:45546200-45549600	Weak transcription	Esophagus	oesophagus
8	chr18:45546400-45548600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:45547200-45555600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr18:45547400-45548400	Enhancers	GM12878-XiMat	blood
11	chr18:45547400-45548600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr18:45547400-45550600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:45547400-45551000	Enhancers	A549	lung
14	chr18:45547600-45548000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr18:45547600-45548200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:45547600-45548800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:45547600-45549200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:45547600-45550800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:45547800-45548000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr18:45547800-45548000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr18:45547800-45548200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr18:45547800-45548800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr18:45547800-45549200	Enhancers	Spleen	Spleen
24	chr18:45547800-45553200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links