Variant report

Variant	rs73444228
Chromosome Location	chr13:30319983-30319984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11843283	1.00[AMR][1000 genomes]
rs73444232	1.00[AMR][1000 genomes]
rs7998213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30316400-30320400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:30317200-30320200	Enhancers	Rectal Smooth Muscle	rectum
3	chr13:30317600-30320000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr13:30317600-30324200	Weak transcription	Adipose Nuclei	Adipose
5	chr13:30317600-30335800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:30318000-30320200	Weak transcription	Stomach Mucosa	stomach
7	chr13:30318600-30320000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:30319200-30320000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:30319600-30320600	Enhancers	Colon Smooth Muscle	Colon
10	chr13:30319800-30320000	Enhancers	Pancreas	Pancrea
11	chr13:30319800-30320000	Bivalent Enhancer	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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