Variant report

Variant	rs7998213
Chromosome Location	chr13:30311606-30311607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11843283	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11843295	0.92[YRI][hapmap]
rs17073884	1.00[MEX][hapmap]
rs2036974	1.00[MEX][hapmap]
rs73444228	1.00[AMR][1000 genomes]
rs73444232	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997787	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30307800-30312800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:30310000-30317400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30310200-30317200	Weak transcription	GM12878-XiMat	blood
4	chr13:30311200-30311800	Enhancers	Liver	Liver
5	chr13:30311200-30311800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr13:30311600-30311800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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