Variant report

Variant	rs73445253
Chromosome Location	chr6:67789841-67789842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:67782061..67786173-chr6:67786217..67792802,8	K562	blood:
2	chr6:67783004..67786159-chr6:67787646..67791458,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10944947	0.86[EUR][1000 genomes]
rs11968405	0.86[EUR][1000 genomes]
rs11968427	0.86[EUR][1000 genomes]
rs60117484	0.93[EUR][1000 genomes]
rs61508481	0.93[EUR][1000 genomes]
rs61585743	0.93[EUR][1000 genomes]
rs73445254	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9445803	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9453965	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9454014	1.00[EUR][1000 genomes]
rs9454017	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886061	chr6:67048298-67902610	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948808	chr6:67154418-67790773	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948518	chr6:67184276-67907571	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031632	chr6:67196653-67833819	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538290	chr6:67196653-67833819	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886070	chr6:67488983-68094791	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv886075	chr6:67688283-67799565	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886076	chr6:67688283-67820373	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886077	chr6:67688283-67829945	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886078	chr6:67688283-67853490	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886081	chr6:67702591-67829945	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv886082	chr6:67702591-67853490	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886083	chr6:67702591-67895080	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv886084	chr6:67702591-67913124	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv886085	chr6:67702591-68140783	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1023350	chr6:67703437-67955122	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv538291	chr6:67703437-67955122	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv886086	chr6:67704821-67822272	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv886087	chr6:67704821-67853490	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv463140	chr6:67704821-67977326	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv603585	chr6:67704821-67977326	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv886088	chr6:67732748-67799565	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv830679	chr6:67752480-67914539	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv603586	chr6:67753155-67820373	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv463141	chr6:67757630-67856976	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv603587	chr6:67757630-67856976	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv886089	chr6:67757878-67876797	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv3376873	chr6:67759780-67789955	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv2757175	chr6:67765059-67804416	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv2759438	chr6:67765059-67804416	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv1028488	chr6:67769601-67803508	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv1035057	chr6:67769601-67803855	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv3418797	chr6:67772134-68314069	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	nsv886090	chr6:67775437-67895080	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv1023593	chr6:67785652-67795946	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv1025041	chr6:67785725-67795946	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv1033101	chr6:67785919-67798798	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv2754622	chr6:67786379-67795779	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
39	nsv7912	chr6:67788186-67794412	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67789800-67790200	Enhancers	Liver	Liver

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