Variant report

Variant	rs73446057
Chromosome Location	chr15:74037335-74037336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28628284	1.00[AMR][1000 genomes]
rs60753933	1.00[AMR][1000 genomes]
rs73446054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3312318	chr15:74037219-74037408	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3312320	chr15:74037233-74037407	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74030000-74039200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:74031200-74038600	Weak transcription	Fetal Lung	lung
3	chr15:74033000-74037400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:74033200-74038600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:74033400-74038800	Weak transcription	Fetal Brain Male	brain
6	chr15:74034000-74038800	Weak transcription	Ovary	ovary
7	chr15:74034200-74038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:74034400-74038600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:74034400-74038800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:74034600-74037400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74034600-74038800	Weak transcription	Brain Angular Gyrus	brain
12	chr15:74035000-74038600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:74035000-74043000	Strong transcription	Fetal Stomach	stomach
14	chr15:74035200-74037800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:74035200-74038000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:74035200-74038000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr15:74035400-74038600	Weak transcription	HSMMtube	muscle
18	chr15:74035400-74038800	Weak transcription	Right Atrium	heart
19	chr15:74035400-74039000	Weak transcription	Left Ventricle	heart
20	chr15:74035600-74038000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:74035600-74038600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74035600-74038800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:74035600-74039000	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:74035600-74039600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:74035600-74043800	Weak transcription	Esophagus	oesophagus
26	chr15:74035800-74038800	Weak transcription	Adipose Nuclei	Adipose
27	chr15:74035800-74038800	Weak transcription	Right Ventricle	heart
28	chr15:74035800-74039200	Weak transcription	Hela-S3	cervix
29	chr15:74035800-74039400	Weak transcription	A549	lung
30	chr15:74035800-74042400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:74035800-74043200	Weak transcription	Brain Substantia Nigra	brain
32	chr15:74036200-74037600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:74036200-74037800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr15:74036400-74037800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:74036400-74038000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:74036400-74041200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:74036600-74037600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr15:74036600-74037800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:74036800-74037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:74036800-74037600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:74037000-74037600	Enhancers	Brain Anterior Caudate	brain
42	chr15:74037000-74038800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:74037000-74039000	Enhancers	Brain Germinal Matrix	brain
44	chr15:74037000-74039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:74037000-74041400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:74037200-74037600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:74037200-74038000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr15:74037200-74038200	Weak transcription	Fetal Brain Female	brain

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