Variant report

Variant	rs60753933
Chromosome Location	chr15:74085506-74085507
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11072441	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072442	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28399856	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28412257	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28523278	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28628284	1.00[AMR][1000 genomes]
rs58482914	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73446054	1.00[AMR][1000 genomes]
rs73446057	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74079000-74097400	Weak transcription	Pancreas	Pancrea
2	chr15:74080200-74089000	Weak transcription	Fetal Brain Female	brain
3	chr15:74080600-74089000	Weak transcription	Right Ventricle	heart
4	chr15:74081200-74086600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:74081400-74092800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:74083000-74086600	Weak transcription	HepG2	liver
7	chr15:74083800-74091600	Weak transcription	Fetal Lung	lung
8	chr15:74084000-74088400	Weak transcription	Left Ventricle	heart
9	chr15:74084000-74091400	Weak transcription	Right Atrium	heart
10	chr15:74084600-74085800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:74084600-74088200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:74084800-74085800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:74085000-74087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:74085200-74088400	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links