Variant report

Variant	rs28523278
Chromosome Location	chr15:74082167-74082168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11072441	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072442	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399856	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28412257	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58482914	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60753933	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74077800-74084200	Weak transcription	Gastric	stomach
2	chr15:74079000-74097400	Weak transcription	Pancreas	Pancrea
3	chr15:74079800-74083800	Weak transcription	Left Ventricle	heart
4	chr15:74080200-74089000	Weak transcription	Fetal Brain Female	brain
5	chr15:74080600-74084800	Weak transcription	Brain Anterior Caudate	brain
6	chr15:74080600-74089000	Weak transcription	Right Ventricle	heart
7	chr15:74081000-74083000	Enhancers	HepG2	liver
8	chr15:74081000-74083400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:74081200-74083800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:74081200-74084800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:74081200-74086600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:74081400-74083800	Enhancers	Fetal Lung	lung
13	chr15:74081400-74092800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:74081800-74082200	Enhancers	Fetal Stomach	stomach
15	chr15:74081800-74082400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:74081800-74082600	Enhancers	Placenta	Placenta
17	chr15:74082000-74083400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:74082000-74083400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:74082000-74083400	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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