Variant report

Variant	rs28399856
Chromosome Location	chr15:74088794-74088795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74002449..74003122-chr15:74088672..74089439,2	MCF-7	breast:
2	chr15:74087708..74090506-chr15:74096468..74098729,2	MCF-7	breast:
3	chr15:74087043..74089739-chr15:74218844..74220695,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10162782	1.00[AMR][1000 genomes]
rs11072441	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072442	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13353158	1.00[AMR][1000 genomes]
rs28412257	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28523278	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28576252	1.00[AMR][1000 genomes]
rs57113197	1.00[AMR][1000 genomes]
rs58482914	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60753933	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74079000-74097400	Weak transcription	Pancreas	Pancrea
2	chr15:74080200-74089000	Weak transcription	Fetal Brain Female	brain
3	chr15:74080600-74089000	Weak transcription	Right Ventricle	heart
4	chr15:74081400-74092800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74083800-74091600	Weak transcription	Fetal Lung	lung
6	chr15:74084000-74091400	Weak transcription	Right Atrium	heart
7	chr15:74085800-74089200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:74085800-74091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74087600-74088800	Enhancers	Fetal Kidney	kidney
10	chr15:74087600-74090000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:74087600-74090200	Enhancers	Brain Germinal Matrix	brain
12	chr15:74087600-74096600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:74088200-74089000	Enhancers	Fetal Muscle Trunk	muscle
14	chr15:74088200-74089600	Enhancers	Spleen	Spleen
15	chr15:74088200-74090200	Enhancers	Fetal Muscle Leg	muscle
16	chr15:74088200-74100200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:74088400-74089000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr15:74088400-74089200	Bivalent Enhancer	Fetal Stomach	stomach
19	chr15:74088400-74089600	Enhancers	Brain Anterior Caudate	brain
20	chr15:74088400-74089600	Enhancers	Left Ventricle	heart
21	chr15:74088400-74089800	Enhancers	HSMMtube	muscle
22	chr15:74088400-74090200	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:74088600-74089600	Enhancers	Brain Hippocampus Middle	brain

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