Variant report

Variant	rs28576252
Chromosome Location	chr15:74270960-74270961
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74265716..74267266-chr15:74269225..74271894,2	MCF-7	breast:
2	chr15:74269620..74272982-chr15:74277388..74280849,3	MCF-7	breast:
3	chr15:74270540..74273109-chr15:74273687..74276918,3	K562	blood:
4	chr15:74269606..74273109-chr15:74273492..74276918,5	K562	blood:

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28399856	1.00[AMR][1000 genomes]
rs28541681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28575085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710821	1.00[AFR][1000 genomes]
rs57113197	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74265800-74271600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:74265800-74272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:74265800-74273800	Weak transcription	Spleen	Spleen
4	chr15:74265800-74273800	Weak transcription	HMEC	breast
5	chr15:74265800-74274000	Weak transcription	Right Ventricle	heart
6	chr15:74265800-74274200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:74265800-74275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74266000-74273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:74267200-74277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:74268400-74273800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:74268600-74271400	Weak transcription	GM12878-XiMat	blood
12	chr15:74268600-74273000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr15:74268600-74273800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:74268600-74273800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74268600-74273800	Weak transcription	NHEK	skin
16	chr15:74268800-74272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:74268800-74272800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:74268800-74273000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:74268800-74273000	Weak transcription	Fetal Thymus	thymus
20	chr15:74268800-74273800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:74268800-74273800	Weak transcription	Thymus	Thymus
22	chr15:74268800-74273800	Weak transcription	NHLF	lung
23	chr15:74268800-74274200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:74269000-74272000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:74269000-74272800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:74269400-74272000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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