Variant report

Variant	rs57113197
Chromosome Location	chr15:74233025-74233026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74002231..74003126-chr15:74232770..74233458,3	MCF-7	breast:
2	chr15:74232628..74233359-chr15:74243274..74243823,2	MCF-7	breast:
3	chr15:74002166..74003145-chr15:74232560..74233376,6	MCF-7	breast:
4	chr15:74002166..74003145-chr15:74232538..74233420,9	MCF-7	breast:
5	chr15:74231523..74233258-chr15:74237856..74239596,2	MCF-7	breast:
6	chr15:74231490..74233026-chr15:74235513..74237845,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28399856	1.00[AMR][1000 genomes]
rs28541681	1.00[AMR][1000 genomes]
rs28575085	1.00[AMR][1000 genomes]
rs28576252	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
2	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
4	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
6	chr15:74228600-74233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:74228600-74233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:74229000-74233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
11	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
14	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:74229400-74233200	Weak transcription	NHEK	skin
16	chr15:74229600-74233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:74229600-74233200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:74229600-74233200	Weak transcription	HMEC	breast
19	chr15:74229600-74237000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:74230000-74234000	Weak transcription	Lung	lung
21	chr15:74230000-74236400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74230000-74236600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:74230000-74239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:74230200-74236400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:74230400-74234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:74230800-74233800	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr15:74231400-74233800	Enhancers	Fetal Lung	lung
28	chr15:74231400-74234600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:74231400-74234600	Genic enhancers	Fetal Stomach	stomach
30	chr15:74231400-74235000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:74231400-74235000	Enhancers	Fetal Muscle Trunk	muscle
32	chr15:74231400-74235400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:74231400-74235400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr15:74231400-74235600	Enhancers	Aorta	Aorta
35	chr15:74231400-74238000	Enhancers	Placenta	Placenta
36	chr15:74231600-74234400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:74231600-74234800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:74231600-74235200	Enhancers	Right Ventricle	heart
39	chr15:74231600-74235200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr15:74231800-74235200	Enhancers	Fetal Heart	heart
41	chr15:74231800-74242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:74232200-74233600	Enhancers	Liver	Liver
43	chr15:74232200-74234800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr15:74232200-74235600	Enhancers	Spleen	Spleen
45	chr15:74232400-74233200	Genic enhancers	HSMM	muscle
46	chr15:74232400-74233600	Enhancers	A549	lung
47	chr15:74232400-74234000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:74232400-74236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:74232600-74233800	Flanking Active TSS	Osteobl	bone
50	chr15:74232600-74239400	Weak transcription	Brain Anterior Caudate	brain

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