Variant report

Variant	rs13353158
Chromosome Location	chr15:73918772-73918773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73888462..73890253-chr15:73918321..73921060,2	K562	blood:
2	chr15:73918568..73921533-chr15:73923050..73927898,6	K562	blood:
3	chr15:73914101..73915854-chr15:73917290..73918947,3	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10162782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12324021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399856	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
3	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
4	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
5	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:73899600-73924200	Weak transcription	Gastric	stomach
9	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
10	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
13	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
14	chr15:73902000-73920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
17	chr15:73904800-73919200	Weak transcription	Pancreas	Pancrea
18	chr15:73904800-73921400	Weak transcription	K562	blood
19	chr15:73904800-73924200	Weak transcription	Lung	lung
20	chr15:73909600-73919600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
22	chr15:73910400-73921200	Weak transcription	NH-A	brain
23	chr15:73910400-73922200	Weak transcription	HSMM	muscle
24	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:73910600-73920600	Weak transcription	Osteobl	bone
26	chr15:73910600-73921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:73911000-73921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:73911400-73920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:73912400-73919600	Enhancers	Colon Smooth Muscle	Colon
30	chr15:73912800-73918800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:73912800-73920600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:73912800-73921200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:73912800-73922600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:73912800-73922600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:73913400-73920000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:73913600-73919400	Weak transcription	Fetal Intestine Large	intestine
37	chr15:73914400-73919400	Weak transcription	Liver	Liver
38	chr15:73914400-73920400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:73914600-73920400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:73915600-73921400	Enhancers	NHEK	skin
41	chr15:73915800-73921200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:73916000-73919400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr15:73916000-73921400	Weak transcription	Psoas Muscle	Psoas
44	chr15:73916000-73921400	Enhancers	Rectal Smooth Muscle	rectum
45	chr15:73916000-73922800	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr15:73916000-73922800	Enhancers	Fetal Heart	heart
47	chr15:73916200-73918800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:73916200-73919400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:73916600-73920600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:73916600-73921800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links