Variant report

Variant	rs10162782
Chromosome Location	chr15:73884811-73884812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73883878..73886307-chr15:73924446..73926967,3	MCF-7	breast:
2	chr15:73884268..73887055-chr15:73887297..73890115,2	K562	blood:
3	chr15:73872462..73876250-chr15:73883404..73887216,4	MCF-7	breast:
4	chr15:73877182..73878738-chr15:73883851..73886514,2	K562	blood:
5	chr15:73884170..73887060-chr15:73925275..73926977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12324021	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399856	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
3	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:73860600-73885000	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:73870400-73887000	Strong transcription	Primary T cells from cord blood	blood
8	chr15:73871600-73886000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:73871600-73886400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:73871600-73887400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:73873200-73888800	Strong transcription	NHEK	skin
12	chr15:73876000-73885800	Weak transcription	Stomach Mucosa	stomach
13	chr15:73876200-73885800	Weak transcription	Fetal Brain Male	brain
14	chr15:73877600-73886800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:73878600-73885800	Weak transcription	Small Intestine	intestine
16	chr15:73879800-73885600	Weak transcription	Fetal Heart	heart
17	chr15:73880000-73885400	Weak transcription	HUVEC	blood vessel
18	chr15:73880000-73887000	Weak transcription	Aorta	Aorta
19	chr15:73880000-73888600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:73880000-73894600	Weak transcription	Fetal Thymus	thymus
21	chr15:73880200-73885600	Weak transcription	K562	blood
22	chr15:73880200-73888000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:73880200-73888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:73880200-73888400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:73880200-73894000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:73881000-73892000	Weak transcription	Hela-S3	cervix
27	chr15:73881200-73885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:73881200-73893800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:73881400-73894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:73881400-73894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:73881600-73885800	Weak transcription	Psoas Muscle	Psoas
32	chr15:73881600-73887200	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:73881600-73888400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:73881600-73890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:73881800-73891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:73882000-73885800	Weak transcription	Brain Substantia Nigra	brain
37	chr15:73882000-73885800	Weak transcription	Pancreas	Pancrea
38	chr15:73882000-73893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:73882200-73888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:73882200-73895000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:73882400-73885800	Weak transcription	Dnd41	blood
42	chr15:73882600-73888200	Weak transcription	Esophagus	oesophagus
43	chr15:73882800-73887800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:73882800-73888400	Weak transcription	HSMMtube	muscle
45	chr15:73882800-73889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:73882800-73890200	Weak transcription	NHLF	lung
47	chr15:73882800-73893200	Weak transcription	Liver	Liver
48	chr15:73882800-73893200	Weak transcription	Colonic Mucosa	Colon
49	chr15:73882800-73894200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:73883600-73885200	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links