Variant report

Variant	rs12324021
Chromosome Location	chr15:73851611-73851612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73850828..73853350-chr15:73997208..73999812,2	MCF-7	breast:
2	chr15:73851476..73853100-chr15:73924271..73925886,2	MCF-7	breast:
3	chr15:73851598..73853176-chr15:73925548..73927059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10162782	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73837000-73860000	Weak transcription	Gastric	stomach
2	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
5	chr15:73846000-73853400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
10	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas
13	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:73846800-73852200	Strong transcription	Fetal Stomach	stomach
15	chr15:73846800-73854800	Weak transcription	Brain Angular Gyrus	brain
16	chr15:73846800-73855400	Weak transcription	Brain Germinal Matrix	brain
17	chr15:73847000-73852200	Strong transcription	Fetal Intestine Small	intestine
18	chr15:73847000-73852200	Strong transcription	HSMMtube	muscle
19	chr15:73847000-73856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:73847000-73856200	Strong transcription	Osteobl	bone
21	chr15:73847000-73856800	Strong transcription	NHEK	skin
22	chr15:73847200-73852200	Strong transcription	Primary T cells from cord blood	blood
23	chr15:73847200-73854800	Weak transcription	Brain Substantia Nigra	brain
24	chr15:73847200-73855400	Weak transcription	Fetal Thymus	thymus
25	chr15:73847400-73852200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:73847400-73855800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr15:73847400-73856200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:73847400-73856200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:73847400-73856400	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr15:73847400-73856600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:73847400-73856600	Strong transcription	Left Ventricle	heart
32	chr15:73847400-73862000	Strong transcription	Fetal Intestine Large	intestine
33	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
34	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:73847600-73852200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:73847600-73853200	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:73847600-73853400	Strong transcription	Colon Smooth Muscle	Colon
38	chr15:73847600-73853600	Strong transcription	NHLF	lung
39	chr15:73847600-73855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:73847600-73855400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:73847600-73856200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:73847600-73858200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr15:73847600-73865000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:73847600-73865800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:73847600-73866200	Strong transcription	Liver	Liver
47	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
48	chr15:73847800-73852200	Strong transcription	NH-A	brain
49	chr15:73847800-73853400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:73847800-73856400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links