Variant report

rSNPs within LD-proxies of this variant (count:17)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

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Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55670800-55688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55683200-55688000	Weak transcription	Fetal Lung	lung
3	chr6:55683600-55689200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:55684000-55692000	Weak transcription	Fetal Brain Male	brain
5	chr6:55687200-55688200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:55687200-55692400	Weak transcription	HepG2	liver
7	chr6:55687400-55688200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:55687400-55688600	Enhancers	HSMM	muscle
9	chr6:55687400-55690600	Enhancers	HSMMtube	muscle
10	chr6:55687600-55688000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:55687600-55688200	Enhancers	NHDF-Ad	bronchial
12	chr6:55687600-55690000	Enhancers	Fetal Heart	heart
13	chr6:55687800-55688000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:55687800-55688000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:55687800-55688000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:55687800-55688000	Enhancers	NHLF	lung
17	chr6:55687800-55690600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:55687800-55693200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:55687800-55693200	Enhancers	HMEC	breast
20	chr6:55687800-55693800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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