Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16887302	1.00[MEX][hapmap]
rs2065028	1.00[EUR][1000 genomes]
rs4576248	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55778645	1.00[AMR][1000 genomes]
rs56750083	1.00[AMR][1000 genomes]
rs57385665	1.00[AMR][1000 genomes]
rs58284917	1.00[AMR][1000 genomes]
rs59347412	1.00[AMR][1000 genomes]
rs60070969	1.00[AMR][1000 genomes]
rs6909150	1.00[AMR][1000 genomes]
rs6928231	1.00[MEX][hapmap]
rs6932083	1.00[AMR][1000 genomes]
rs73446194	1.00[AMR][1000 genomes]
rs73446200	1.00[AMR][1000 genomes]
rs73446201	1.00[AMR][1000 genomes]
rs73448104	1.00[AMR][1000 genomes]
rs73448111	1.00[AMR][1000 genomes]
rs73448135	1.00[AMR][1000 genomes]
rs73744903	1.00[AMR][1000 genomes]
rs73744908	1.00[AMR][1000 genomes]
rs7766232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55532400-55542800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:55533600-55540600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:55533800-55539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:55535000-55543600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:55536600-55540600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:55538200-55538600	Weak transcription	Fetal Lung	lung
7	chr6:55538200-55539200	Enhancers	Pancreatic Islets	Pancreatic Islet

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