Variant report

Variant	rs73448156
Chromosome Location	chr6:45441609-45441610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45435009..45438702-chr6:45441425..45444027,3	K562	blood:
2	chr6:45430581..45433056-chr6:45439999..45442351,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12665523	0.95[AMR][1000 genomes]
rs12665622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16873429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873437	1.00[AMR][1000 genomes]
rs6905689	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73441957	0.93[ASN][1000 genomes]
rs73448153	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73448159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73448164	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751050	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45407200-45462000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:45419200-45456200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:45422000-45445000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:45423000-45454400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:45425600-45444000	Weak transcription	Fetal Thymus	thymus
6	chr6:45426800-45444200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:45429400-45445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:45429600-45444800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:45429600-45444800	Weak transcription	NHEK	skin
10	chr6:45429800-45445000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:45429800-45445400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:45430000-45444600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:45430200-45444600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:45430200-45445400	Weak transcription	Primary T cells from cord blood	blood
15	chr6:45430200-45445800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:45432200-45447800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:45436600-45447800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45436800-45444800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:45437000-45443800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:45439000-45445200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:45439200-45444800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:45439600-45442400	Enhancers	Osteobl	bone
23	chr6:45439600-45444800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:45439800-45442400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:45439800-45442600	Enhancers	Fetal Lung	lung
26	chr6:45440000-45442000	Enhancers	Brain Substantia Nigra	brain
27	chr6:45440200-45442000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:45440400-45442600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:45440400-45442800	Weak transcription	Fetal Stomach	stomach
30	chr6:45440400-45443000	Enhancers	Stomach Mucosa	stomach
31	chr6:45440400-45447800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:45440600-45445600	Weak transcription	NHLF	lung
33	chr6:45440600-45448200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:45440800-45441800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:45440800-45442200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:45440800-45442200	Weak transcription	Brain Anterior Caudate	brain
37	chr6:45440800-45443200	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:45440800-45443400	Weak transcription	Brain Angular Gyrus	brain
39	chr6:45440800-45443600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:45440800-45443600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:45440800-45443800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:45440800-45445600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:45440800-45445600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:45440800-45445600	Weak transcription	NHDF-Ad	bronchial
45	chr6:45440800-45447800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:45441000-45441800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:45441000-45442000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:45441000-45444800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:45441200-45441800	Weak transcription	Fetal Heart	heart
50	chr6:45441200-45441800	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links