Variant report

Variant	rs73448334
Chromosome Location	chr6:63721230-63721231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57018776	1.00[AMR][1000 genomes]
rs58146677	1.00[AMR][1000 genomes]
rs61541658	1.00[AMR][1000 genomes]
rs73434842	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434845	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434849	1.00[AMR][1000 genomes]
rs73434852	1.00[AMR][1000 genomes]
rs73434857	1.00[AMR][1000 genomes]
rs73434864	1.00[AMR][1000 genomes]
rs73434867	1.00[AMR][1000 genomes]
rs73434868	1.00[AMR][1000 genomes]
rs73448308	1.00[AMR][1000 genomes]
rs73448311	1.00[AMR][1000 genomes]
rs73448320	1.00[AMR][1000 genomes]
rs73448322	1.00[AMR][1000 genomes]
rs73448323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448325	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448327	1.00[AMR][1000 genomes]
rs73496834	1.00[AMR][1000 genomes]
rs73496838	1.00[AMR][1000 genomes]
rs73496846	1.00[AMR][1000 genomes]
rs73496850	1.00[AMR][1000 genomes]
rs73497345	1.00[AMR][1000 genomes]
rs73497347	1.00[AMR][1000 genomes]
rs73497348	1.00[AMR][1000 genomes]
rs73497350	1.00[AMR][1000 genomes]
rs73497351	1.00[AMR][1000 genomes]
rs73497354	1.00[AMR][1000 genomes]
rs73497355	1.00[AMR][1000 genomes]
rs73497358	1.00[AMR][1000 genomes]
rs73497363	1.00[AMR][1000 genomes]
rs73497381	1.00[AMR][1000 genomes]
rs73497402	1.00[AMR][1000 genomes]
rs73499307	1.00[AMR][1000 genomes]
rs73499313	1.00[AMR][1000 genomes]
rs73499341	1.00[AMR][1000 genomes]
rs73499369	1.00[AMR][1000 genomes]
rs73499397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv885979	chr6:63380661-63753657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv821649	chr6:63511879-63888251	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv885984	chr6:63534312-63722285	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885985	chr6:63534312-63753657	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv885986	chr6:63534312-63774385	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv885988	chr6:63615339-63830759	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv885989	chr6:63658063-63741689	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv885990	chr6:63665146-63746291	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv830672	chr6:63673337-63775429	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv508409	chr6:63705964-63723868	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv2758058	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2759434	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63720400-63722600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:63720600-63721600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr6:63720600-63722400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:63721200-63721800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:63721200-63722600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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