Variant report

Variant	rs73448370
Chromosome Location	chr9:22079435-22079436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:22079101..22081952-chr9:22082169..22083681,2	MCF-7	breast:
2	chr9:22040792..22042968-chr9:22078121..22080153,2	MCF-7	breast:
3	chr9:22071994..22076005-chr9:22076573..22081529,4	MCF-7	breast:
4	chr9:22004310..22006547-chr9:22078607..22080566,2	MCF-7	breast:
5	chr9:22078947..22090885-chr9:22096375..22111093,52	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147883	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10217720	0.83[AMR][1000 genomes]
rs16905635	0.91[AMR][1000 genomes]
rs16905644	0.91[AMR][1000 genomes]
rs66735603	0.83[AMR][1000 genomes]
rs72654222	0.91[AMR][1000 genomes]
rs72654246	0.83[AMR][1000 genomes]
rs72654298	0.83[AMR][1000 genomes]
rs7855190	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:22073600-22084600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:22076000-22079800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:22077000-22080400	Enhancers	Primary T cells from cord blood	blood
6	chr9:22077400-22080800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:22077800-22080800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr9:22078000-22079800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:22078000-22080800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr9:22078000-22080800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:22078200-22080200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr9:22078200-22080800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:22078200-22080800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:22078600-22079600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:22078600-22080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:22078800-22079600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:22078800-22079800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:22078800-22080000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:22078800-22080400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:22079000-22080000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:22079000-22080000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:22079000-22084600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:22079200-22080800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr9:22079200-22080800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr9:22079400-22079800	Genic enhancers	Dnd41	blood
26	chr9:22079400-22080400	Enhancers	Fetal Thymus	thymus
27	chr9:22079400-22080800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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